Counties with the highest STI rates in New York

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March 18, 2024
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Counties with the highest STI rates in New York

Sexually transmitted infections are on the rise, putting more people at risk as they spread. Chlamydia rates have nearly doubled since 2000, while the rate of gonorrhea went up by 50% over the same period. The Centers for Disease Control and Prevention reports that syphilis rates are reaching levels last seen in the 1950s.

But some regions of the U.S. are seeing higher rates than others.

Stacker used CDC data to look at which counties reported the highest rate of sexually transmitted infections in New York. Counties are ranked by the rate of chlamydia infections, the most prominent STI at the national level, with gonorrhea and then syphilis rates serving as tiebreakers. This story focuses on bacterial infections, which can be cured, rather than viral infections such as HIV and herpes. At the county level, 2021 cases are the most recent available from the CDC, but state and national-level data for 2022 are also included. This story focuses on sexual transmissions and does not include congenital syphilis cases that were inherited from the mother.

Condoms are the most effective way to prevent the spread of STIs for people with multiple sexual partners, but research has found a decreasing rate of condom use among straight, bisexual, and gay male populations.

During the HIV/AIDS epidemic throughout the 1980s and 1990s, public health efforts advocating for condom use helped curb the spread of the virus. Today, however, condoms are no longer the only tool. Pills such as PrEP lower the risk of contracting HIV from sex by as much as 99%.

While more recent data is not available, the latest CDC survey from 2011-2015 showed less than half of unmarried men used condoms during the last time they had sex.

Among high school students having sex, the share using condoms has fallen from 60% in 2011 to 52% in 2021. While one-third of sexually active students used hormonal birth control, only 10% used both condoms and birth control. Methods like the pill and IUDs are effective at preventing pregnancy but do not stop the spread of STIs.

Chlamydia, gonorrhea, and syphilis are technically bacterial infections—meaning they can be cured with antibiotics—but they can still have lasting health impacts, including pelvic inflammatory disease and infertility. These risks are heightened when left untreated, which many STIs are as they don't obviously present themselves.

The CDC recommends annual testing for cisgender women, transgender men, and gender-nonconforming people with cervixes. It also recommends annual testing for males with male sexual partners. People in these groups who frequently have sex with anonymous partners should be tested every three to six months. Anyone with symptoms should always get tested according to the guidelines.

The CDC says there is little evidence that screening among straight men lowers the spread, and the agency's limited budget is put towards programs benefiting the most at-risk groups. However, some public health groups advocate for testing among all people regardless of sex and sexual orientation.

Data from the National Survey of Family Growth shows men on average have more opposite-sex sexual partners than women, and some argue that catching STIs throughout a sexual network rather than just for the most at-risk groups could curb their spread.

Soon, a pill may also help counter the spread of STIs. DoxyPEP can be taken 24 to 72 hours after unprotected sex and stops an STI before it becomes spreadable and symptomatic. The CDC has shared proposed guidelines recommending it for men who have sex with men and transgender women. The drug was originally approved for treating inhalation of anthrax, and doctors can prescribe it for off-label use.

Read on to see how STI infection rates in New York compare nationally, and the top counties.

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Emma Rubin // Stacker

State-level statistics

- Chlamydia cases: 526.9 per 100K (#14 nationally, 103,673 cases)
- Gonorrhea cases: 220.4 per 100K (#15 nationally, 43,362 cases)
- Primary and secondary syphilis cases: 18.3 per 100K (#22 nationally, 3,603 cases)
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#50. Warren County

- Chlamydia cases: 175.3 per 100K people (115 cases)
- Gonorrhea cases: 42.7 per 100K people (28 cases)
- Syphilis cases (non-congenital): 7.6 per 100K people (5 cases)
--- Primary and secondary syphilis: 1.5 per 100K people (1 case)
--- Nonprimary and nonsecondary early syphilis: 6.1 per 100K people (4 cases)
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James Kirkikis // Shutterstock

#49. Putnam County

- Chlamydia cases: 177.7 per 100K people (174 cases)
- Gonorrhea cases: 34.7 per 100K people (34 cases)
- Syphilis cases (non-congenital): 14.3 per 100K people (14 cases)
--- Primary and secondary syphilis: 6.1 per 100K people (6 cases)
--- Nonprimary and nonsecondary early syphilis: 8.2 per 100K people (8 cases)
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#48. Delaware County

- Chlamydia cases: 180.3 per 100K people (80 cases)
- Gonorrhea cases: 31.5 per 100K people (14 cases)
- Syphilis cases (non-congenital): 11.3 per 100K people (5 cases)
--- Primary and secondary syphilis: 9.0 per 100K people (4 cases)
--- Nonprimary and nonsecondary early syphilis: 2.3 per 100K people (1 case)
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Paige Petrie // Shutterstock

#47. Allegany County

- Chlamydia cases: 182.2 per 100K people (84 cases)
- Gonorrhea cases: 26.0 per 100K people (12 cases)
- Syphilis cases (non-congenital): 2.2 per 100K people (1 case)
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 2.2 per 100K people (1 case)
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#46. Tioga County

- Chlamydia cases: 189.7 per 100K people (91 case)
- Gonorrhea cases: 41.7 per 100K people (20 cases)
- Syphilis cases (non-congenital): 2.1 per 100K people (1 case)
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 2.1 per 100K people (1 case)
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Felix Lipov // Shutterstock

#45. Greene County

- Chlamydia cases: 189.7 per 100K people (92 cases)
- Gonorrhea cases: 63.9 per 100K people (31 case)
- Syphilis cases (non-congenital): 20.6 per 100K people (10 cases)
--- Primary and secondary syphilis: 12.4 per 100K people (6 cases)
--- Nonprimary and nonsecondary early syphilis: 8.2 per 100K people (4 cases)
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#44. Seneca County

- Chlamydia cases: 190.0 per 100K people (64 cases)
- Gonorrhea cases: 71.2 per 100K people (24 cases)
- Syphilis cases (non-congenital): 11.9 per 100K people (4 cases)
--- Primary and secondary syphilis: 8.9 per 100K people (3 cases)
--- Nonprimary and nonsecondary early syphilis: 3.0 per 100K people (1 case)
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#43. Columbia County

- Chlamydia cases: 207.2 per 100K people (128 cases)
- Gonorrhea cases: 59.9 per 100K people (37 cases)
- Syphilis cases (non-congenital): 8.1 per 100K people (5 cases)
--- Primary and secondary syphilis: 3.2 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: 4.9 per 100K people (3 cases)
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#42. Schuyler County

- Chlamydia cases: 208.4 per 100K people (37 cases)
- Gonorrhea cases: 78.9 per 100K people (14 cases)
- Syphilis cases (non-congenital): 5.6 per 100K people (1 case)
--- Primary and secondary syphilis: 5.6 per 100K people (1 case)
--- Nonprimary and nonsecondary early syphilis: 0 cases
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#41. Orleans County

- Chlamydia cases: 209.0 per 100K people (84 cases)
- Gonorrhea cases: 74.6 per 100K people (30 cases)
- Syphilis cases (non-congenital): 2.5 per 100K people (1 case)
--- Primary and secondary syphilis: 2.5 per 100K people (1 case)
--- Nonprimary and nonsecondary early syphilis: 0 cases
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#40. Ulster County

- Chlamydia cases: 209.9 per 100K people (384 cases)
- Gonorrhea cases: 78.2 per 100K people (143 cases)
- Syphilis cases (non-congenital): 14.2 per 100K people (26 cases)
--- Primary and secondary syphilis: 4.9 per 100K people (9 cases)
--- Nonprimary and nonsecondary early syphilis: 9.3 per 100K people (17 cases)
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Richard Cavalleri // Shutterstock

#39. Clinton County

- Chlamydia cases: 213.6 per 100K people (170 cases)
- Gonorrhea cases: 42.7 per 100K people (34 cases)
- Syphilis cases (non-congenital): 3.8 per 100K people (3 cases)
--- Primary and secondary syphilis: 2.5 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: 1.3 per 100K people (1 case)
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fandangle // Shutterstock

#38. Herkimer County

- Chlamydia cases: 216.9 per 100K people (130 cases)
- Gonorrhea cases: 58.4 per 100K people (35 cases)
- Syphilis cases (non-congenital): 3.3 per 100K people (2 cases)
--- Primary and secondary syphilis: 3.3 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: 0 cases
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#37. Otsego County

- Chlamydia cases: 227.1 per 100K people (132 cases)
- Gonorrhea cases: 36.1 per 100K people (21 case)
- Syphilis cases (non-congenital): 12.0 per 100K people (7 cases)
--- Primary and secondary syphilis: 8.6 per 100K people (5 cases)
--- Nonprimary and nonsecondary early syphilis: 3.4 per 100K people (2 cases)
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#36. Chenango County

- Chlamydia cases: 238.5 per 100K people (111 case)
- Gonorrhea cases: 51.6 per 100K people (24 cases)
- Syphilis cases (non-congenital): 8.6 per 100K people (4 cases)
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 8.6 per 100K people (4 cases)
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#35. Ontario County

- Chlamydia cases: 244.4 per 100K people (275 cases)
- Gonorrhea cases: 82.7 per 100K people (93 cases)
- Syphilis cases (non-congenital): 5.3 per 100K people (6 cases)
--- Primary and secondary syphilis: 3.6 per 100K people (4 cases)
--- Nonprimary and nonsecondary early syphilis: 1.8 per 100K people (2 cases)
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#34. Cattaraugus County

- Chlamydia cases: 246.0 per 100K people (188 cases)
- Gonorrhea cases: 79.8 per 100K people (61 case)
- Syphilis cases (non-congenital): 1.3 per 100K people (1 case)
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 1.3 per 100K people (1 case)
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#33. Sullivan County

- Chlamydia cases: 246.8 per 100K people (197 cases)
- Gonorrhea cases: 87.7 per 100K people (70 cases)
- Syphilis cases (non-congenital): 13.8 per 100K people (11 case)
--- Primary and secondary syphilis: 3.8 per 100K people (3 cases)
--- Nonprimary and nonsecondary early syphilis: 10.0 per 100K people (8 cases)
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#32. St. Lawrence County

- Chlamydia cases: 249.9 per 100K people (270 cases)
- Gonorrhea cases: 28.7 per 100K people (31 case)
- Syphilis cases (non-congenital): 2.8 per 100K people (3 cases)
--- Primary and secondary syphilis: 1.9 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: .9 per 100K people (1 case)
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Wangkun Jia // Shutterstock

#31. Oswego County

- Chlamydia cases: 253.9 per 100K people (298 cases)
- Gonorrhea cases: 108.2 per 100K people (127 cases)
- Syphilis cases (non-congenital): 4.3 per 100K people (5 cases)
--- Primary and secondary syphilis: 2.6 per 100K people (3 cases)
--- Nonprimary and nonsecondary early syphilis: 1.7 per 100K people (2 cases)
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#30. Genesee County

- Chlamydia cases: 264.5 per 100K people (153 cases)
- Gonorrhea cases: 100.3 per 100K people (58 cases)
- Syphilis cases (non-congenital): 5.2 per 100K people (3 cases)
--- Primary and secondary syphilis: 1.7 per 100K people (1 case)
--- Nonprimary and nonsecondary early syphilis: 3.5 per 100K people (2 cases)
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#29. Montgomery County

- Chlamydia cases: 268.4 per 100K people (133 cases)
- Gonorrhea cases: 149.3 per 100K people (74 cases)
- Syphilis cases (non-congenital): 0 cases
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 0 cases
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#28. Cayuga County

- Chlamydia cases: 270.2 per 100K people (205 cases)
- Gonorrhea cases: 105.4 per 100K people (80 cases)
- Syphilis cases (non-congenital): 11.9 per 100K people (9 cases)
--- Primary and secondary syphilis: 6.6 per 100K people (5 cases)
--- Nonprimary and nonsecondary early syphilis: 5.3 per 100K people (4 cases)
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#27. Fulton County

- Chlamydia cases: 282.4 per 100K people (150 cases)
- Gonorrhea cases: 88.5 per 100K people (47 cases)
- Syphilis cases (non-congenital): 7.5 per 100K people (4 cases)
--- Primary and secondary syphilis: 7.5 per 100K people (4 cases)
--- Nonprimary and nonsecondary early syphilis: 0 cases
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Felix Lipov // Shutterstock

#26. Rockland County

- Chlamydia cases: 295.7 per 100K people (1,003 cases)
- Gonorrhea cases: 55.4 per 100K people (188 cases)
- Syphilis cases (non-congenital): 12.1 per 100K people (41 case)
--- Primary and secondary syphilis: 6.2 per 100K people (21 case)
--- Nonprimary and nonsecondary early syphilis: 5.9 per 100K people (20 cases)
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Colin D. Young // Shutterstock

#25. Dutchess County

- Chlamydia cases: 297.5 per 100K people (884 cases)
- Gonorrhea cases: 78.1 per 100K people (232 cases)
- Syphilis cases (non-congenital): 26.9 per 100K people (80 cases)
--- Primary and secondary syphilis: 13.1 per 100K people (39 cases)
--- Nonprimary and nonsecondary early syphilis: 13.8 per 100K people (41 case)
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#24. Rensselaer County

- Chlamydia cases: 300.2 per 100K people (481 case)
- Gonorrhea cases: 154.2 per 100K people (247 cases)
- Syphilis cases (non-congenital): 23.7 per 100K people (38 cases)
--- Primary and secondary syphilis: 11.9 per 100K people (19 cases)
--- Nonprimary and nonsecondary early syphilis: 11.9 per 100K people (19 cases)
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#23. Richmond County

- Chlamydia cases: 303.3 per 100K people (1,497 cases)
- Gonorrhea cases: 109.0 per 100K people (538 cases)
- Syphilis cases (non-congenital): 21.1 per 100K people (104 cases)
--- Primary and secondary syphilis: 6.5 per 100K people (32 cases)
--- Nonprimary and nonsecondary early syphilis: 14.6 per 100K people (72 cases)
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#22. Wayne County

- Chlamydia cases: 305.8 per 100K people (278 cases)
- Gonorrhea cases: 114.4 per 100K people (104 cases)
- Syphilis cases (non-congenital): 6.6 per 100K people (6 cases)
--- Primary and secondary syphilis: 2.2 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: 4.4 per 100K people (4 cases)
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#21. Tompkins County

- Chlamydia cases: 320.5 per 100K people (337 cases)
- Gonorrhea cases: 134.1 per 100K people (141 case)
- Syphilis cases (non-congenital): 17.1 per 100K people (18 cases)
--- Primary and secondary syphilis: 6.7 per 100K people (7 cases)
--- Nonprimary and nonsecondary early syphilis: 10.5 per 100K people (11 case)
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#20. Suffolk County

- Chlamydia cases: 321.6 per 100K people (4,909 cases)
- Gonorrhea cases: 78.8 per 100K people (1,202 cases)
- Syphilis cases (non-congenital): 17.5 per 100K people (267 cases)
--- Primary and secondary syphilis: 6.5 per 100K people (99 cases)
--- Nonprimary and nonsecondary early syphilis: 11.0 per 100K people (168 cases)
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#19. Nassau County

- Chlamydia cases: 323.2 per 100K people (4,496 cases)
- Gonorrhea cases: 70.7 per 100K people (984 cases)
- Syphilis cases (non-congenital): 17.3 per 100K people (241 case)
--- Primary and secondary syphilis: 5.6 per 100K people (78 cases)
--- Nonprimary and nonsecondary early syphilis: 11.7 per 100K people (163 cases)
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#18. Cortland County

- Chlamydia cases: 323.9 per 100K people (150 cases)
- Gonorrhea cases: 90.7 per 100K people (42 cases)
- Syphilis cases (non-congenital): 0 cases
--- Primary and secondary syphilis: 0 cases
--- Nonprimary and nonsecondary early syphilis: 0 cases
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#17. Chautauqua County

- Chlamydia cases: 341.5 per 100K people (433 cases)
- Gonorrhea cases: 146.7 per 100K people (186 cases)
- Syphilis cases (non-congenital): 6.3 per 100K people (8 cases)
--- Primary and secondary syphilis: 1.6 per 100K people (2 cases)
--- Nonprimary and nonsecondary early syphilis: 4.7 per 100K people (6 cases)
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#16. Westchester County

- Chlamydia cases: 352.7 per 100K people (3,520 cases)
- Gonorrhea cases: 100.0 per 100K people (998 cases)
- Syphilis cases (non-congenital): 22.0 per 100K people (220 cases)
--- Primary and secondary syphilis: 11.5 per 100K people (115 cases)
--- Nonprimary and nonsecondary early syphilis: 10.5 per 100K people (105 cases)
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#15. Orange County

- Chlamydia cases: 354.5 per 100K people (1,434 cases)
- Gonorrhea cases: 82.3 per 100K people (333 cases)
- Syphilis cases (non-congenital): 26.2 per 100K people (106 cases)
--- Primary and secondary syphilis: 15.8 per 100K people (64 cases)
--- Nonprimary and nonsecondary early syphilis: 10.4 per 100K people (42 cases)
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Nina Alizada // Shutterstock

#14. Oneida County

- Chlamydia cases: 358.3 per 100K people (825 cases)
- Gonorrhea cases: 172.0 per 100K people (396 cases)
- Syphilis cases (non-congenital): 10.9 per 100K people (25 cases)
--- Primary and secondary syphilis: 6.5 per 100K people (15 cases)
--- Nonprimary and nonsecondary early syphilis: 4.3 per 100K people (10 cases)
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#13. Niagara County

- Chlamydia cases: 358.6 per 100K people (759 cases)
- Gonorrhea cases: 168.7 per 100K people (357 cases)
- Syphilis cases (non-congenital): 10.9 per 100K people (23 cases)
--- Primary and secondary syphilis: 7.6 per 100K people (16 cases)
--- Nonprimary and nonsecondary early syphilis: 3.3 per 100K people (7 cases)
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#12. Broome County

- Chlamydia cases: 379.7 per 100K people (749 cases)
- Gonorrhea cases: 149.1 per 100K people (294 cases)
- Syphilis cases (non-congenital): 7.1 per 100K people (14 cases)
--- Primary and secondary syphilis: 2.5 per 100K people (5 cases)
--- Nonprimary and nonsecondary early syphilis: 4.6 per 100K people (9 cases)
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#11. Chemung County

- Chlamydia cases: 390.1 per 100K people (324 cases)
- Gonorrhea cases: 175.8 per 100K people (146 cases)
- Syphilis cases (non-congenital): 8.4 per 100K people (7 cases)
--- Primary and secondary syphilis: 4.8 per 100K people (4 cases)
--- Nonprimary and nonsecondary early syphilis: 3.6 per 100K people (3 cases)
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#10. Albany County

- Chlamydia cases: 444.3 per 100K people (1,394 cases)
- Gonorrhea cases: 215.8 per 100K people (677 cases)
- Syphilis cases (non-congenital): 16.3 per 100K people (51 case)
--- Primary and secondary syphilis: 10.2 per 100K people (32 cases)
--- Nonprimary and nonsecondary early syphilis: 6.1 per 100K people (19 cases)
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#9. Schenectady County

- Chlamydia cases: 467.5 per 100K people (739 cases)
- Gonorrhea cases: 241.0 per 100K people (381 case)
- Syphilis cases (non-congenital): 44.3 per 100K people (70 cases)
--- Primary and secondary syphilis: 32.3 per 100K people (51 case)
--- Nonprimary and nonsecondary early syphilis: 12.0 per 100K people (19 cases)
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#8. Erie County

- Chlamydia cases: 474.5 per 100K people (4,511 case)
- Gonorrhea cases: 251.9 per 100K people (2,395 cases)
- Syphilis cases (non-congenital): 21.7 per 100K people (206 cases)
--- Primary and secondary syphilis: 12.5 per 100K people (119 cases)
--- Nonprimary and nonsecondary early syphilis: 9.2 per 100K people (87 cases)
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#7. Onondaga County

- Chlamydia cases: 482.4 per 100K people (2,283 cases)
- Gonorrhea cases: 283.8 per 100K people (1,343 cases)
- Syphilis cases (non-congenital): 23.2 per 100K people (110 cases)
--- Primary and secondary syphilis: 16.1 per 100K people (76 cases)
--- Nonprimary and nonsecondary early syphilis: 7.2 per 100K people (34 cases)
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#6. Queens County

- Chlamydia cases: 544.2 per 100K people (12,685 cases)
- Gonorrhea cases: 186.8 per 100K people (4,355 cases)
- Syphilis cases (non-congenital): 50.0 per 100K people (1,165 cases)
--- Primary and secondary syphilis: 17.2 per 100K people (401 case)
--- Nonprimary and nonsecondary early syphilis: 32.8 per 100K people (764 cases)
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#5. Monroe County

- Chlamydia cases: 608.1 per 100K people (4,592 cases)
- Gonorrhea cases: 348.5 per 100K people (2,632 cases)
- Syphilis cases (non-congenital): 73.1 per 100K people (552 cases)
--- Primary and secondary syphilis: 53.8 per 100K people (406 cases)
--- Nonprimary and nonsecondary early syphilis: 19.3 per 100K people (146 cases)
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Wangkun Jia // Shutterstock

#4. Jefferson County

- Chlamydia cases: 614.0 per 100K people (714 cases)
- Gonorrhea cases: 142.7 per 100K people (166 cases)
- Syphilis cases (non-congenital): 8.6 per 100K people (10 cases)
--- Primary and secondary syphilis: 3.4 per 100K people (4 cases)
--- Nonprimary and nonsecondary early syphilis: 5.2 per 100K people (6 cases)
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#3. Kings County

- Chlamydia cases: 720.0 per 100K people (19,015 cases)
- Gonorrhea cases: 328.8 per 100K people (8,684 cases)
- Syphilis cases (non-congenital): 70.7 per 100K people (1,868 cases)
--- Primary and secondary syphilis: 25.9 per 100K people (684 cases)
--- Nonprimary and nonsecondary early syphilis: 44.8 per 100K people (1,184 cases)
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#2. New York County

- Chlamydia cases: 871.2 per 100K people (13,738 cases)
- Gonorrhea cases: 538.0 per 100K people (8,484 cases)
- Syphilis cases (non-congenital): 126.6 per 100K people (1,997 cases)
--- Primary and secondary syphilis: 39.1 per 100K people (616 cases)
--- Nonprimary and nonsecondary early syphilis: 87.6 per 100K people (1,381 case)
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#1. Bronx County

- Chlamydia cases: 1,052.9 per 100K people (15,003 cases)
- Gonorrhea cases: 425.8 per 100K people (6,068 cases)
- Syphilis cases (non-congenital): 113.3 per 100K people (1,615 cases)
--- Primary and secondary syphilis: 34.7 per 100K people (495 cases)
--- Nonprimary and nonsecondary early syphilis: 78.6 per 100K people (1,120 cases)

This story features data reporting and writing by Emma Rubin and is part of a series utilizing data automation across 49 states.

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